itero: guided contig assembly for target enrichment data

Release v1.1. (Changelog)

Author:Brant C. Faircloth
Date:10 October 2018 20:14 UTC (+0000)
Copyright:This documentation is available under a Creative Commons (CC-BY) license.

itero is a “guided-assembly” workflow for target enrichment data that uses bwa, samtools, bedtools, and spades to provided high-quality assemblies of raw reads from Illumina instruments.


itero is open-source (see License) and we welcome contributions from anyone who is interested. Please make a pull request on github. The issue tracker for itero is also available on github.


If you have an issue, please ensure that you are experiencing this issue on a supported OS (see Installation) using the conda installation of itero. If possible, please submit a test case demonstrating the issue and indicate which platform, git checkout, and phyluce version you are using.

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